Geoffrey Fudenberg: search on Z-Library

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1

Super-resolution imaging reveals distinct chromatin folding for different epigenetic states

Boettiger, Alistair N., Bintu, Bogdan, Moffitt, Jeffrey R., Wang, Siyuan, Beliveau, Brian J., Fudenberg, Geoffrey, Imakaev, Maxim, Mirny, Leonid A., Wu, Chao-ting, Zhuang, Xiaowei

Journal:

Year:

2016

Language:

english

File:

PDF, 1.54 MB

english, 2016

2

Higher-order chromatin structure: bridging physics and biology

Geoffrey Fudenberg, Leonid A Mirny

Journal:

Current Opinion in Genetics & Development

Year:

2012

Language:

english

File:

PDF, 701 KB

english, 2012

3

Iterative correction of Hi-C data reveals hallmarks of chromosome organization

Imakaev, Maxim, Fudenberg, Geoffrey, McCord, Rachel Patton, Naumova, Natalia, Goloborodko, Anton, Lajoie, Bryan R, Dekker, Job, Mirny, Leonid A

Journal:

Year:

2012

Language:

english

File:

PDF, 1.17 MB

english, 2012

4

S cerevisiaegenome as a confined equilibrium polymer brush

Anton Goloborodko, Jon Matthew Belton, Geoffrey Fudenberg…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 79 KB

english, 2013

5

Chromosomal architecture changes upon cell differentiation

Maxim Imakaev, Geoffrey Fudenberg, Leonid Mirny

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 77 KB

english, 2013

6

Polymer models of topological insulators

Boryana Doyle, Maxim Imakaev, Geoffrey Fudenberg, Leonid Mirny

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 85 KB

english, 2013

7

Polymer Models of Yeast S. Cerevisiae Genome Organization

Goloborodko, Anton, Fudenberg, Geoffrey, Belton, Jon-Matthew, Imakaev, Maxim, Dekker, Job, Mirny, Leonid¯

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 77 KB

english, 2013

8

Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. pombe

Mizuguchi, Takeshi, Fudenberg, Geoffrey, Mehta, Sameet, Belton, Jon-Matthew, Taneja, Nitika, Folco, Hernan Diego, FitzGerald, Peter, Dekker, Job, Mirny, Leonid, Barrowman, Jemima, Grewal, Shiv I. S.

Journal:

Year:

2014

Language:

english

File:

PDF, 6.57 MB

english, 2014

9

Chromatin Loops as Allosteric Modulators of Enhancer-Promoter Interactions

Doyle, Boryana, Fudenberg, Geoffrey, Imakaev, Maxim, Mirny, Leonid A., Marti-Renom, Marc A.

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 2.07 MB

english, 2014

10

Modeling chromosomes: Beyond pretty pictures

Imakaev, Maxim V., Fudenberg, Geoffrey, Mirny, Leonid A.

Journal:

Year:

2015

Language:

english

File:

PDF, 674 KB

english, 2015

11

History of chromosome rearrangements reflects the spatial organization of yeast chromosomes

Khrameeva, Ekaterina E., Fudenberg, Geoffrey, Gelfand, Mikhail S., Mirny, Leonid A.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2016

Language:

english

File:

PDF, 1.48 MB

english, 2016

12

Formation of Chromosomal Domains by Loop Extrusion

Fudenberg, Geoffrey, Imakaev, Maxim, Lu, Carolyn, Goloborodko, Anton, Abdennur, Nezar, Mirny, Leonid A.

Journal:

Year:

2016

Language:

english

File:

PDF, 3.92 MB

english, 2016

13

Micro-C XL: assaying chromosome conformation from the nucleosome to the entire genome

Hsieh, Tsung-Han S, Fudenberg, Geoffrey, Goloborodko, Anton, Rando, Oliver J

Journal:

Year:

2016

Language:

english

File:

PDF, 1.64 MB

english, 2016

14

Polymer Models Integrate Inverted Nuclear Geometry with Conventional HI-C Compartmentalization

Falk, Martin J., Naumova, Natalia M., Fudenberg, Geoffrey, Feodorova, Yana N., Dekker, Job, Mirny, Leonid A., Solovei, Irina

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 42 KB

english, 2017

15

FISH-ing for captured contacts: towards reconciling FISH and 3C

Fudenberg, Geoffrey, Imakaev, Maxim

Journal:

Year:

2017

Language:

english

File:

PDF, 799 KB

english, 2017

16

SMC complexes differentially compact mitotic chromosomes according to genomic context

Schalbetter, Stephanie Andrea, Goloborodko, Anton, Fudenberg, Geoffrey, Belton, Jon-Matthew, Miles, Catrina, Yu, Miao, Dekker, Job, Mirny, Leonid, Baxter, Jonathan

Journal:

Nature Cell Biology

Year:

2017

Language:

english

File:

PDF, 10.56 MB

english, 2017

17

Chromatin Organization by an Interplay of Loop Extrusion and Compartmental Segregation

Nuebler, Johannes, Fudenberg, Geoffrey, Imakaev, Maxim, Abdennur, Nezar, Mirny, Leonid

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 42 KB

english, 2018

18

Emerging Evidence of Chromosome Folding by Loop Extrusion

Fudenberg, Geoffrey, Abdennur, Nezar, Imakaev, Maxim, Goloborodko, Anton, Mirny, Leonid A.

Journal:

Cold Spring Harbor Symposia on Quantitative Biology

Year:

2018

Language:

english

File:

PDF, 637 KB

english, 2018

19

Chromatin organization by an interplay of loop extrusion and compartmental segregation

Nuebler, Johannes, Fudenberg, Geoffrey, Imakaev, Maxim, Abdennur, Nezar, Mirny, Leonid A.

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 2.55 MB

english, 2018

20

Heterochromatin drives compartmentalization of inverted and conventional nuclei

Falk, Martin, Feodorova, Yana, Naumova, Natalia, Imakaev, Maxim, Lajoie, Bryan R., Leonhardt, Heinrich, Joffe, Boris, Dekker, Job, Fudenberg, Geoffrey, Solovei, Irina, Mirny, Leonid A.

Journal:

Year:

2019

Language:

english

File:

PDF, 35.98 MB

english, 2019

21

Publisher Correction: Heterochromatin drives compartmentalization of inverted and conventional nuclei

Falk, Martin, Feodorova, Yana, Naumova, Natalia, Imakaev, Maxim, Lajoie, Bryan R., Leonhardt, Heinrich, Joffe, Boris, Dekker, Job, Fudenberg, Geoffrey, Solovei, Irina, Mirny, Leonid A.

Journal:

Year:

2019

Language:

english

File:

PDF, 709 KB

english, 2019

22

High-order chromatin architecture determines the landscape of chromosomal alterations in cancer

Fudenberg, Geoffrey, Getz, Gad, Meyerson, Matthew, Mirny, Leonid

Journal:

Nature Precedings

Year:

2011

Language:

english

File:

PDF, 2.89 MB

english, 2011

23

High-order chromatin architecture determines the landscape of chromosomal alterations in cancer

Fudenberg, Geoffrey, Getz, Gad, Meyerson, Matthew, Mirny, Leonid

Journal:

Nature Precedings

Year:

2011

File:

PDF, 2.89 MB

2011

24

Highly structured homolog pairing reflects functional organization of the Drosophila genome

AlHaj Abed, Jumana, Erceg, Jelena, Goloborodko, Anton, Nguyen, Son C., McCole, Ruth B., Saylor, Wren, Fudenberg, Geoffrey, Lajoie, Bryan R., Dekker, Job, Mirny, Leonid A., Wu, C.-ting

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 4.43 MB

english, 2019

25

The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos

Erceg, Jelena, AlHaj Abed, Jumana, Goloborodko, Anton, Lajoie, Bryan R., Fudenberg, Geoffrey, Abdennur, Nezar, Imakaev, Maxim, McCole, Ruth B., Nguyen, Son C., Saylor, Wren, Joyce, Eric F., Senaratne,

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 2.52 MB

english, 2019

26

Principles of meiotic chromosome assembly revealed in S. cerevisiae

Schalbetter, Stephanie A., Fudenberg, Geoffrey, Baxter, Jonathan, Pollard, Katherine S., Neale, Matthew J.

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 4.52 MB

english, 2019

27

Molecular basis of CTCF binding polarity in genome folding

Nora, ElphÃ¨ge P., Caccianini, Laura, Fudenberg, Geoffrey, So, Kevin, Kameswaran, Vasumathi, Nagle, Abigail, Uebersohn, Alec, Hajj, Bassam, Saux, AgnÃ¨s Le, Coulon, Antoine, Mirny, Leonid A., Pollard,

Journal:

Nature Communications

Year:

2020

File:

PDF, 2.49 MB

2020